/***************************************************************************
 *   Copyright (C) 2007 by Alexandre Masselot,,,   *
 *   alex@alex-laptop   *
 *                                                                         *
 *   This program is free software; you can redistribute it and/or modify  *
 *   it under the terms of the GNU Library General Public License as       *
 *   published by the Free Software Foundation; either version 2 of the    *
 *   License, or (at your option) any later version.                       *
 *                                                                         *
 *   This program is distributed in the hope that it will be useful,       *
 *   but WITHOUT ANY WARRANTY; without even the implied warranty of        *
 *   MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the         *
 *   GNU General Public License for more details.                          *
 *                                                                         *
 *   You should have received a copy of the GNU Library General Public     *
 *   License along with this program; if not, write to the                 *
 *   Free Software Foundation, Inc.,                                       *
 *   59 Temple Place - Suite 330, Boston, MA  02111-1307, USA.             *
 ***************************************************************************/
#ifndef BOLSPECTRUMLCMSMSMASSINDEXANCHOR_H
#define BOLSPECTRUMLCMSMSMASSINDEXANCHOR_H

#include "massindexanchor.h"
#include "spectrumlcmsms.h"

namespace bol {

/**
  Anchor to register SpectrumLcmsm into a Mass Index

  Let's not forget here that we want to be able to take into account situatinis where a sectrum has more than one mass (isotoptic error, multiple acquisition...)

  @author Alexandre Masselot,,, <alex@alex-laptop>
 */
  class SpectrumLcmsmsMassIndexAnchor : public MassIndexAnchor
  {
    private:
      const SpectrumLcmsms * m_spectrum;
      const unsigned int m_charge;
    public:
      /**
     * instanciate an Anchor
     * @param m the uncharged mass
     * @param sp a pointer to the vector
     * @param c the related charge
       */
      SpectrumLcmsmsMassIndexAnchor(const double m, const SpectrumLcmsms* sp, unsigned int c): MassIndexAnchor(m), m_spectrum(sp), m_charge(c){
      }

      /**
       * 
       */
      ~SpectrumLcmsmsMassIndexAnchor(){
      }

      /**
       * 
       * @return the reerenced spectrum
       */
      const SpectrumLcmsms* spectrum() const {
        return m_spectrum;
      }

      /**
       * 
       * @return the matching 
       */
      unsigned int charge() const {
        return m_charge;
      }
  
  

  };

}

#endif
